Dornheim Segmenter is a leading software application for segmentation, labeling, measuring and analysis of arbitrary 3D structures and objects in DICOM files and other volumetric data in various formats. Even the most complex structures can be fast segmented, exported as voxel masks or 3D meshes, and automatically measured and analyzed in many ways using versatile state-of-the-art tools with semi-automatic support. With Dornheim Segmenter you can:
- Create 3D binary masks and templates for further processing and data filtering
- Create 3D mesh models for graphical rendering and 3D printing
- Perform Measurements of length, angle, area, surface and volumetry
- Perform advanced analyses of the contents of 3D datasets
- Label 3D datasets for training and evaluation of artificial intelligence systems
- Export SEG datasets for the Dornheim Real Anatomy platform
- Create high-quality images and animations with annotations
Highlights
- All standard segmentation tools included
- Segmentation in layers with shape interpolation and threshold estimation
- Interactive 3D cutting
- Unique tools for fast segmentation of complex structures
- Special optimized mesh generation
- Comprehensive analysis functions for automatic measurement
- Conversion of voxel and mesh data in both directions
- Volume rendering of segmented structures
- Complete 3D DICOM viewer included with DICOM conversion and DICOM anonymization
- Available languages: English, German, Spanish, French
Dornheim Segmenter Installation files
Windows (64 bit)
Mac
Linux (64 bit)
By downloading the installation file, you accept the terms and conditions and the terms of use.
Product Comparison
| Basic | Premium | Professional | ||
Continuous License | ||||
| Single user license | $ 0.00/ € 0.00 | $ 999.00/ € 999.00 | $ 2,499.00/ € 2,499.00 | |
Temporary Licenses | ||||
| Annual License (incl. Upgrades and Service) | --- | $ 399.90/ € 399.90 | $ 999.90/ € 999.90 | |
| Monthly License (incl. Upgrades and Service) | --- | $ 49.99/ € 49.99 | $ 124.99/ € 124.99 | |
| Basic | Premium | Professional | ||
Plattforms | ||||
| Windows | ✓ | ✓ | ✓ | |
| Mac | ✓ | ✓ | ✓ | |
| Linux | ✓ | ✓ | ✓ | |
Hardware Support | ||||
| Multi-Core Processor Support | ✓ | ✓ | ✓ | |
| OpenGL Support (NVIDIA, AMD, Intel) | ✓ | ✓ | ✓ | |
Configuration | ||||
| Language Selection (English, German) | ✓ | ✓ | ✓ | |
| GUI Profiles (Medical, Technical) | --- | ✓ | ✓ | |
| Color Themes (light grey, charcoal grey) | --- | ✓ | ✓ | |
| Configure 3D View Background | --- | ✓ | ✓ | |
| Basic | Premium | Professional | ||
Import | ||||
| Segmenter Projects (incl. Segmentations, 3D Models, Views, etc.) | ✓ | ✓ | ✓ | |
| DICOM (2D Stacks, 3D Multiframe) | ✓ | ✓ | ✓ | |
| Generic Volume Data Sets (RAW, MetaIO, VTI) | ✓ | ✓ | ✓ | |
| Image Stacks (BMP, JPEG, PNG, TIFF, GIF, PBM, PGM, PPM, WEBP, XBM, XPM) | ✓ | ✓ | ✓ | |
| VGStudio (VGI) | ✓ | ✓ | ✓ | |
| 3D Ultrasound (VOL (Kretzfile/GE)) | ✓ | ✓ | ✓ | |
| Segmentations (RAW, MetaIO, VTI, VGI, VOL, Image Stacks) | ✓ | ✓ | ✓ | |
| Meshes (OBJ, PLY, STL, VTP) | ✓ | ✓ | ✓ | |
| Annotations (XML) | --- | --- | ✓ | |
Export | ||||
| Segmenter Projects (incl. Segmentations, 3D Models, Views, etc.) | ✓ | ✓ | ✓ | |
| DICOM (2D Stacks, 3D Multiframe) | --- | --- | ✓ | |
| Generic Volume Data Sets (RAW, MetaIO, VTI, DICOM) | --- | --- | ✓ | |
| Image Stacks (BMP, JPG, PNG, TIFF, PBM, PGM, PPM, WEBP, XBM, XPM, DCM) | --- | --- | ✓ | |
| Segmentations (RAW, MetaIO, VTI, Image stacks) | ✓ | ✓ | ✓ | |
| 3D Models (IV, PLY, OBJ, STL, VTP, VRML, STEP, IGES) | ✓ | ✓ | ✓ | |
| Snapshots (BMP, JPG, PNG) | --- | ✓ | ✓ | |
| Videos (AVI, MPG) | --- | ✓ | ✓ | |
| 3D Snapshots (Stereoscopy) | --- | ✓ | ✓ | |
| 3D Videos (Stereoscopy) | --- | ✓ | ✓ | |
| Annotations (XML) | --- | --- | ✓ | |
| Basic | Premium | Professional | ||
DICOM | ||||
| Patient Management | ✓ | ✓ | ✓ | |
| Recording Information | --- | ✓ | ✓ | |
| DICOM Tag List | --- | ✓ | ✓ | |
| Local Patient Database | --- | ✓ | ✓ | |
| DICOM Scan Cache | --- | ✓ | ✓ | |
| DICOM Preview | --- | ✓ | ✓ | |
| PACS Connection | --- | --- | ✓ | |
| Anonymization | --- | --- | ✓ | |
Visualization | ||||
| Versatile Viewport Layouts | ✓ | ✓ | ✓ | |
| 2D Slices (Paraxial) | ✓ | ✓ | ✓ | |
| 3D Planes (Paraxial) | ✓ | ✓ | ✓ | |
| 3D Planes (Freely Orientable) | --- | ✓ | ✓ | |
| 3D Volume Rendering (Window / Level) | ✓ | ✓ | ✓ | |
| 3D Volume Rendering (Basic Material Funktions) | --- | ✓ | ✓ | |
| 3D Volume Rendering (Free Material Functions) | --- | ✓ | ✓ | |
| 3D Volume Rendering (Segmentations) | ✓ | ✓ | ✓ | |
| 3D Models (Meshes) | ✓ | ✓ | ✓ | |
| Clipping (Freely Orientable Box) | --- | ✓ | ✓ | |
| Clipping (Segmentation-based) | ✓ | ✓ | ✓ | |
| Camera Navigation Mode | --- | ✓ | ✓ | |
| Basic | Premium | Professional | ||
Stereoscopy | ||||
| Anaglyph 3D | --- | ✓ | ✓ | |
| Stacked / Side-by-side, e.g. for YouTube (only in image and video export) | --- | ✓ | ✓ | |
| Line-by-line Representation, e.g. Polarisation | --- | ✓ | ✓ | |
Snapshots | ||||
| Navigation | ✓ | ✓ | ✓ | |
| Animation | ✓ | ✓ | ✓ | |
| Creation | ✓ | ✓ | ✓ | |
| Basic | Premium | Professional | ||
Datasets (Voxel-based) | ||||
| Reformatting | --- | --- | ✓ | |
| Orientation | --- | --- | ✓ | |
| Axis Mirror | --- | --- | ✓ | |
| Smoothing / Noise Suppression (Gauss, Median, Bilateral) | --- | --- | ✓ | |
| 2D / 3D Section | --- | --- | ✓ | |
| Inversion | --- | --- | ✓ | |
| Masking | --- | --- | ✓ | |
| Adaptive Intensity | --- | --- | ✓ | |
Annotations | ||||
| Text | --- | --- | ✓ | |
| Point | --- | --- | ✓ | |
| Arrow | --- | --- | ✓ | |
| Path | --- | --- | ✓ | |
| Image | --- | --- | ✓ | |
| Color Group | --- | --- | ✓ | |
| Basic | Premium | Professional | ||
Segmentations (Voxel-based) | ||||
| Manual Segmentation | ✓ | ✓ | ✓ | |
| ROI-based Segmentation (incl. Automatism) | ✓ | ✓ | ✓ | |
| Slice Interpolation (incl. Automatism) | ✓ | ✓ | ✓ | |
| Threshold (incl. Automatism) | ✓ | ✓ | ✓ | |
| Region Growing (incl. Automatism) | ✓ | ✓ | ✓ | |
| Voxelization (of 3D Models) | ✓ | ✓ | ✓ | |
| 2D / 3D Section (incl. Automatism) | --- | ✓ | ✓ | |
| Morphological Operations | --- | ✓ | ✓ | |
| Component Operations | --- | ✓ | ✓ | |
| Intelligent Separation | --- | ✓ | ✓ | |
| Logical Operations | ✓ | ✓ | ✓ | |
| Smoothing | --- | ✓ | ✓ | |
3D Models (Mesh-based) | ||||
| Creation from Segmentation | ✓ | ✓ | ✓ | |
| Creation from Segmentation (Anisotropy-optimized) | ✓ | ✓ | ✓ | |
| Creation from Segmentation (Sub-voxel-optimized) | --- | ✓ | ✓ | |
| Simplification / Refinement | --- | ✓ | ✓ | |
| Smoothing | --- | ✓ | ✓ | |
| Motion / Scaling | --- | --- | ✓ | |
| Basic | Premium | Professional | ||
Measuring | ||||
| Length | --- | ✓ | ✓ | |
| Angle | --- | ✓ | ✓ | |
| Area | --- | ✓ | ✓ | |
Analysis | ||||
| Geometry (Diameters, Volumes etc.) | --- | --- | ✓ | |
| Cross Section | --- | --- | ✓ | |
| Distance | --- | --- | ✓ | |
| Intra Slice Distance | --- | --- | ✓ | |
| Contact/ Overlap | --- | --- | ✓ | |
| Similarity | --- | --- | ✓ | |
| Intensity Distribution | --- | --- | ✓ | |
| Porosity (Open / Closed) | --- | --- | ✓ | |
| Measurement statistics | --- | --- | ✓ | |