Dornheim Segmenter is a leading software application for segmentation, labeling, measuring and analysis of arbitrary 3D structures and objects in DICOM files and other volumetric data in various formats. Even the most complex structures can be fast segmented, exported as voxel masks or 3D meshes, and automatically measured and analyzed in many ways using versatile state-of-the-art tools with semi-automatic support. With Dornheim Segmenter you can:

  • Create 3D binary masks and templates for further processing and data filtering
  • Create 3D mesh models for graphical rendering and 3D printing
  • Perform Measurements of length, angle, area, surface and volumetry
  • Perform advanced analyses of the contents of 3D datasets
  • Label 3D datasets for training and evaluation of artificial intelligence systems
  • Export SEG datasets for the Dornheim Real Anatomy platform
  • Create high-quality images and animations with annotations

Highlights

  • All standard segmentation tools included
  • Segmentation in layers with shape interpolation and threshold estimation
  • Interactive 3D cutting
  • Unique tools for fast segmentation of complex structures
  • Special optimized mesh generation
  • Comprehensive analysis functions for automatic measurement
  • Conversion of voxel and mesh data in both directions
  • Volume rendering of segmented structures
  • Complete 3D DICOM viewer included with DICOM conversion and DICOM anonymization
  • Available languages: English, German, Spanish, French

Dornheim Segmenter Installation files

Windows (64 bit)

Mac

Linux (64 bit)

By downloading the installation file, you accept the terms and conditions and the terms of use.

Product Comparison

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Continuous License

Single user license$ 0.00/ € 0.00$ 999.00/ € 999.00$ 2,499.00/ € 2,499.00

Temporary Licenses

Annual License (incl. Upgrades and Service)---$ 399.90/ € 399.90$ 999.90/ € 999.90
Monthly License (incl. Upgrades and Service)---$ 49.99/ € 49.99$ 124.99/ € 124.99
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Plattforms

Windows
Mac
Linux

Hardware Support

Multi-Core Processor Support
OpenGL Support (NVIDIA, AMD, Intel)

Configuration

Language Selection (English, German)
GUI Profiles (Medical, Technical)---
Color Themes (light grey, charcoal grey)---
Configure 3D View Background---
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Import

Segmenter Projects (incl. Segmentations, 3D Models, Views, etc.)
DICOM (2D Stacks, 3D Multiframe)
Generic Volume Data Sets (RAW, MetaIO, VTI)
Image Stacks (BMP, JPEG, PNG, TIFF, GIF, PBM, PGM, PPM, WEBP, XBM, XPM)
VGStudio (VGI)
3D Ultrasound (VOL (Kretzfile/GE))
Segmentations (RAW, MetaIO, VTI, VGI, VOL, Image Stacks)
Meshes (OBJ, PLY, STL, VTP)
Annotations (XML)------

Export

Segmenter Projects (incl. Segmentations, 3D Models, Views, etc.)
DICOM (2D Stacks, 3D Multiframe)------
Generic Volume Data Sets (RAW, MetaIO, VTI, DICOM)------
Image Stacks (BMP, JPG, PNG, TIFF, PBM, PGM, PPM, WEBP, XBM, XPM, DCM)------
Segmentations (RAW, MetaIO, VTI, Image stacks)
3D Models (IV, PLY, OBJ, STL, VTP, VRML, STEP, IGES)
Snapshots (BMP, JPG, PNG)---
Videos (AVI, MPG)---
3D Snapshots (Stereoscopy)---
3D Videos (Stereoscopy)---
Annotations (XML)------
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DICOM

Patient Management
Recording Information---
DICOM Tag List---
Local Patient Database---
DICOM Scan Cache---
DICOM Preview---
PACS Connection------
Anonymization------

Visualization

Versatile Viewport Layouts
2D Slices (Paraxial)
3D Planes (Paraxial)
3D Planes (Freely Orientable)---
3D Volume Rendering (Window / Level)
3D Volume Rendering (Basic Material Funktions)---
3D Volume Rendering (Free Material Functions)---
3D Volume Rendering (Segmentations)
3D Models (Meshes)
Clipping (Freely Orientable Box)---
Clipping (Segmentation-based)
Camera Navigation Mode---
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Stereoscopy

Anaglyph 3D---
Stacked / Side-by-side, e.g. for YouTube (only in image and video export)---
Line-by-line Representation, e.g. Polarisation---

Snapshots

Navigation
Animation
Creation
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Datasets (Voxel-based)

Reformatting------
Orientation------
Axis Mirror------
Smoothing / Noise Suppression (Gauss, Median, Bilateral)------
2D / 3D Section------
Inversion------
Masking------
Adaptive Intensity------

Annotations

Text------
Point------
Arrow------
Path------
Image------
Color Group------
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Segmentations (Voxel-based)

Manual Segmentation
ROI-based Segmentation (incl. Automatism)
Slice Interpolation (incl. Automatism)
Threshold (incl. Automatism)
Region Growing (incl. Automatism)
Voxelization (of 3D Models)
2D / 3D Section (incl. Automatism)---
Morphological Operations---
Component Operations---
Intelligent Separation---
Logical Operations
Smoothing---

3D Models (Mesh-based)

Creation from Segmentation
Creation from Segmentation (Anisotropy-optimized)
Creation from Segmentation (Sub-voxel-optimized)---
Simplification / Refinement---
Smoothing---
Motion / Scaling------
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Measuring

Length---
Angle---
Area---

Analysis

Geometry (Diameters, Volumes etc.)------
Cross Section------
Distance------
Intra Slice Distance------
Contact/ Overlap------
Similarity------
Intensity Distribution------
Porosity (Open / Closed)------
Measurement statistics------